On the other hand, a good question will be straight to the point and contain all of the information necessary for someone else to quickly answer the question. What about rust for "serious method development" ? If you don't know anything about programming, you can start at the Python Village. Press question mark to learn the rest of the keyboard shortcuts. Bioinformatics Stack Exchange is a question and answer site for researchers, developers, students, teachers, and end users interested in bioinformatics. Since a majority of bioinformatics is computer work, short, self-contained, correct/compilable example (SSCCE), Get a bioinformatics education online for free. Having an idea of the big picture is helpful to others because if gives context to what you’re trying to accomplish. Provide details and share your research! Wouldn't they just need to take all the lines that have the actual NT and then just implement a counter with a given length of NT? Ever see a painful-to-read question on a help site where the original poster (OP) asks a question, someone responds asking for more information, OP responds with not enough information, someone else responds asking for further clarification, and so on? If you have a specific bioinformatics related question, there is also the question and answer site BioStar and the next generation sequencing community SEQanswers User account menu. Although some of more advanced workshop require a letter of support from a person in the field of Bioinformatics (ideally from a known leader in the field), these workshops are meant to be introductory and might be suitable for a keen clinical trainee. Last win: Manas Mahale vs. “Solve the … Gene Density • not all of the DNA in a genome encodes protein: bacteria ~90% coding gene/kb human ~1.5% coding gene/35kb . If you ask a simple question that can easily be Googled, then you might never get a response or you might get a lot of. It’s useful. Looks like you're using new Reddit on an old browser. In my opinion, the worst type of question is "How do I do xyz?" This is a very classic question: Which is your favorite programming language in bioinformatics? The type of bioinformatics degree you pursue should be influenced by the type of job that you want. The coding in bioinformatics is where the science is. Now that you know what makes a good question, you will need somewhere to post it. I’m into that. Anybody can ask a question Anybody can answer The best answers are voted up and rise to the top Bioinformatics Beta. Fourth, make sure you proofread your post. Take a tour to get the hang of how Rosalind works. It only takes a minute to sign up. However, there is a key point to keep in mind before you ask your question: don't be lazy. Many UTRs are in exons. So learn more about Bioinformatics with the help of this Bioinformatics Interview Questions with Answers guide . Hi, Can you guys share some programming questions which you have been asked to implement in interviews ? As a bioinformatics analyst, you just need to know about different software or tools, how to execute them via a pipeline or bash scripting, and how to filter your results, analyze them, and extract some useful information. A common approach to inferring a newly sequenced gene’s function is to find similarities with genes of known function. Sorted by quality or something? I'd want a candidate who knows Python/Perl and a bit of R, SQL and bash/unix command line. I like sports. Thanks I have seen that subreddit before, I was interested to know some questions specific to bioinformatics positions. Not many people have the time or patience to go through the effort of deciphering a bad question. Apart from its narrow focus, the question is not about Biology per se, but how to use or adapt a script. Time is important to most people, and bad questions waste OP’s time and potential respondents' time. There are no doubt several suitable books. It is where the human brain, intuition, and skills are applied to the biological question at hand. Your title doesn't necessarily have to be in question tense as long as it gets the point across. However, there is a key point to keep in mind before you ask your question: don't be lazy. The site may not work properly if you don't, If you do not update your browser, we suggest you visit, Press J to jump to the feed. I was wondering if someone could suggest an interesting coding project for a beginner bioinformatics student. Keep in mind that you will still need to do some homework (even with a specific question) before posting your question. Are you getting a new error message? For a collection of exercises to accompany Bioinformatics Algorithms book, go to the Textbook Track. Cookies help us deliver our Services. ## A subreddit to discuss the intersection of computers and biology. Bioinformatics. Exons are not limited to the protein coding regions. By completing the Honors Track, you will be a bioinformatics software professional! There are five elements to asking a good question, and if you follow these elements, you will drastically increase your chances of receiving a response. log in sign up. The interviewer recommended me to have a look at rust instead. Take a tour to get the hang of how Rosalind works. Rosalind is a platform for learning bioinformatics and programming through problem solving. Use MathJax to format equations. Otherwise why include quality data? news for genome hackers. Bioinformatics Stack Exchange is a question and answer site for researchers, developers, students, teachers, and end users interested in bioinformatics. This context might even get you recommendations for shortcuts or alternative approaches that you hadn't considered. And it’s not just you and I, everyone else is the same. An example of a bad title would be "BAM file confusion”, which doesn't specify what the actual problem is, whereas "Trouble calculating average coverage for a BAM file" will make it clear what the issue is. Several features of our data suggest a need for community-wide software standards, including the … Help Center Detailed answers to any questions you might have ... of course. Rosalind is a platform for learning bioinformatics and programming through problem solving. You and I have 3 billion things in common. During an interview for a bioinformatician position, I mentioned I wanted to learn Haskell and C to extend my programming abilities (I use almost exclusively bash and Python). 1. The best programming language for getting started in bioinformatics. Do you? What could all these things be? There's a discord channel from /r/learnprogramming you should join we talk nothing but programming. Second, have a leading sentence or two about what you're trying to accomplish. Apparently 'Owl' is used for gene sequencing, but I had to google it up with quite specific search terms to find out what it is. This topic has already been discussed on the Internet, but I think it would be nice to discuss it here. Bioinformatics programming skills are becoming a necessity across many facets of biology and medicine, owed in part to the continuing explosion of biological data aggregation and the complexity and scale of questions now being addressed through modern bioinformatics. “The course is good so far! • the human genome comprises ~ 25,000 protein-coding genes . Asking a good question makes it much easier for someone to respond since the problem will be clear and example code will be provided. The primary goal of bioinformatics is to increase our understanding of biological processes. Here is a somewhat recent question where I went into detail about what I would ask in an interview along with a few other answers. If you're doing serious method development then C or C++ too. (Because to really learn bioinformatics you have to solve problems.) Go to  indeed.com , and take a look at ... Bioinformatics is full of programming challenges, but did you know that there are people on the Internet right now who are willing to give you programming advice for free? 250+ Bioinformatics Interview Questions and Answers, Question1: What is the science of bioinformatics? It is the glue which … The languages currently popular for bioinformatics work are Python, Java, R, Perl, and BASH, though the use of Perl is gradually declining. This course will cover algorithms for solving various biological problems along with a handful of programming challenges helping you implement these algorithms in Python. dynamic programming to gene finding and other bioinformatics problems. Bioinformatics projects can involve mountains of code, and one of our best defenses against bugs is to write code for humans, not for computers (a point made in the excellent article from Wilson et al., 2012). It only takes a minute to sign up. Learning Bioinformatics #bioinformatics IRC at Freenode Information. Make sure you specify why it doesn’t work. Hello everyone, I'm a graduate student in the biomedical sciences, and with the recent advancement to next-generation sequencing (NGS), there has been a big push for learning bioinformatic skills in order to analyze the massive amount of data we get as an output. Bioinformatics resources for protein biology; Biological data analysis using InterMine (User Interface and API) COSMIC: Integrating and interpreting the world’s knowledge of somatic mutations in cancer; EMBL-EBI: An introduction to sequence searching; EMBL-EBI: Bioinformatics … Bioinformatics or coding language certification to put on resume? Basic coding/bioinformatics: The Canadian Bioinformatics Workshops can provide a “crash course-like” curriculum. Link is here. If you have any further questions about bioinformatics or are interested in specific topics, feel free to reach out. The one I am familiar with as it was used in my University is "Introduction to Bioinformatics" by Arthur Lesk (Oxford) 4th ed (2013). Bioinformatics / ˌ b aɪ. Read 134 answers by scientists with 335 recommendations from their colleagues to the question asked by Oluwaseyi Shorinola on Dec 14, 2012 what do you mean by most frequently occurring sequences if it's just one fastq file? This is from the same guy that made snakemake, by the way. 6 min read. Three paragraphs of background before you get to any code means that you aren't being straight to the point. I’m always interested in new ideas. There are five key elements that make up a good question. But avoid … Asking for help, clarification, or responding to other answers. 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